Websterlab
Matthew Webster's lab blog
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Courses
Perl Programming with Application to Bioinformatics
Course plan
Data files
Exercises
0. The programming environment
1. UNIX and Perl
10. Modules, file tests, directories
2. Scalar data
3. Lists and arrays
4. Subroutines
5. Input and output
6/7. Hashes and regular expressions
8. Control structures
9. Strings and advanced sorting
Lectures
Projects
[Advanced] Analyzing in vitro toxicity and expression data (OK)
[Intermediate] Summarizing and reporting results across multiple files (MW)
[Standard] Analyzing pooled pileup data (EA)
[Standard] Combining SNP data tables (MW)
[Standard] Sequence data format conversion (AW)
Research
5. Input and output
